rs46755022 SNP Detail

Summary

• ID
  rs46755022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170822936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTGCTC TTCTTGGAAT
  CCAGGGCAGT CATAAGCTCA GGACAAGGAC TGGACACCTT ATGGCTCCTC TGGTATTGCT
  GGAACAGGAC CTTGTACAAG GTAAGTTTCA GTTACTCTTA CTTTTGTGTC TCTAGCCTTG
  ATGAAGGATG AGGTAGGTTA GGCACCACCC GTTTTTATGT GGACACTCTG GTTACCATAG
  Y
  TATGCAGAGT GAAATAGGAG AATTCAGAGT CAAGGCAGAC ACACCAGACT TTCTGTCCTG
  CTTCCCATTA CCATGCAGGG CGGAAGGAGT CAACTCTTTT CAGCAAATCA GTTCTGAGTA
  TGTGTTATAG AATCATCTTT CCCAGCTTCC AGTCCATTTT CTCAAAGCAC TATTCATCTC
  AAGCCCATGT ATCCAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345150	NES15844881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46755022					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345150	NES15844881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170822936 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	266 bp proximal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	251 bp proximal
Rr423177	regulatory region 423177	1621 bp distal
Rr423178	regulatory region 423178	1455 bp proximal
Rr423179	regulatory region 423179	1585 bp proximal