rs46752869 SNP Detail

Summary

• ID
  rs46752869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGATCAC AGCTGTGCCC
  CACTGCATTG TGGGCTTTGA GGAATCAGAC TCAGGTTGTC AGGCTTGTCG GGCAACCCTG
  TCCTTTACTG ACGGATGTTG GGAGGAAGCA GGACCTGGAG CACAGTGAAT AAGAGGGAAG
  ATTTAGTACT CCCCTCCCCC AAGACAGGGT TTCTCTCTGT AGTCTGGCTG TCCTCGAACT
  Y
  GGTTTGTAGA CCAGGCTGGC TTTGAGTTTA CAGAGATCCA CCTGCCTGTG CCTCCACACC
  CAGTGGGAAA GATTTAGCTT TAGATGGGTG GGGAATGTGT GCTTGAGCAA AGGGAAGCCT
  GAGGTGGTGT GTGCCTAGAA TCCCAGCACT AGGGAGGCCA AGACAGAACT GTGGGTCGAT
  AGTTCACCGG TGATTCACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737315	ENSMUSSNP2774079	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46752869					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			932 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1972 bp distal
Rr603769	regulatory region 603769			923 bp distal
Rr603770	regulatory region 603770			1510 bp distal
Tssr40079	transcription start site region 40079			1922 bp downstream
Tssr44320	transcription start site region 44320			1196 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant