rs46750440 SNP Detail

Summary

• ID
  rs46750440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69825187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGCCTCC CTGGAGACTT
  GGTTCTTTTC TTGTCTCTTC TCTTTTTGTA TTCACTCTGC CTGATGCCCT AAAAATTCCA
  ATCCTCAGCT CTTAAAGGAC CAGAGGGGTG CGGTGGGCAA GTTTGCTGTT GAAATTATGA
  CTAGGTGGAC CCCAGGAGAG GCCAGCAGAG GGCGCGCTGG GACAGGGAGA GAGATCATAC
  S
  GGGCTATCCG CGTAGCGGGC ACCGCCAGAG CTCACTTGGG GAGCGCGGAC AAACTCAGCG
  GCTCACTCGT GCTACTCCCA GTGGGATAAA TATGATCTCT GTTTAGTGTC GCCCATGTCC
  TCTCATGTGA AGGAGGCGGC CCTCGGAAAG AGTGACTTAG AGCCGTCTGC AGATTGGGAA
  CCAACACTTA TTCTGATCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132363173	ENSMUSSNP5137216	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss323732261	CHEV_11_69747863	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46750440					SNP	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69825187 () rs orientation: forward

Symbol	Name	Function Class
Gm72757	predicted gene, 72757	1950 bp downstream
Rr450159	regulatory region 450159	1896 bp distal
Rr450160	regulatory region 450160	905 bp distal
Rr450161	regulatory region 450161	550 bp distal
Rr450162	regulatory region 450162	56 bp distal
Rr450163	regulatory region 450163	22 bp distal
Rr450164	regulatory region 450164	945 bp proximal
Rr450165	regulatory region 450165	1179 bp proximal
Rr450166	regulatory region 450166	1977 bp proximal
Tssr102563	transcription start site region 102563	1334 bp upstream
Tssr102564	transcription start site region 102564	1436 bp upstream
Tssr102565	transcription start site region 102565	1457 bp upstream
Tssr102566	transcription start site region 102566	1484 bp upstream
Tssr102567	transcription start site region 102567	1504 bp upstream
Tssr102568	transcription start site region 102568	1533 bp upstream
Tssr102569	transcription start site region 102569	1574 bp upstream
Tssr102570	transcription start site region 102570	1628 bp upstream
Tssr108891	transcription start site region 108891	1395 bp downstream
Tssr108892	transcription start site region 108892	1787 bp downstream
Tssr108893	transcription start site region 108893	1811 bp downstream
Tssr108894	transcription start site region 108894	1872 bp downstream
Ybx2	Y box protein 2	1465 bp upstream