rs46747412 SNP Detail

Summary

• ID
  rs46747412
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40754465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGAAGC CAAAGCCCTA
  TTATCCTTCA GGTCAAAACG TAACCTATTA TTAGCGTCCG CGCTACGGTC AGTCGTACAC
  TGACCGCTTT CCGTCAAACT TAAAACCCAC TTCCGGCCTA GAGCGAGGGA AAGCCCCTGC
  TGCGCATGCG TGTCGGTCTC CGCCTCTAAG AAGTGGAGAG TGTGCTGACG TCACCGCCAG
  S
  CTGGCTCGTT CGGAGACCGG CGGGAATTTT TCAAAATGGG AGCTCCGGGG CGCCGCCCAG
  GCCTCGGGAG GTACCGGGGG TACCTTTCGG TGGCGTTGGC GGCGTCGCCA GCGGCGGCGT
  AGAGAAGGCG TCCTGATGGG CGCCAAGACC TGCTGGCTTC TCGGAGCGCT GCCTCGGAGG
  GACTGCGAGA AGGCCGAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400513	NES15892874	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46747412					SNP	G	G	G	G	C	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400513	NES15892874	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40754465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4921509J17Rik	RIKEN cDNA 4921509J17 gene			1566 bp downstream
Plk4	polo like kinase 4			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397650	regulatory region 397650			1347 bp downstream
Rr575856	regulatory region 575856			1019 bp distal
Rr575857	regulatory region 575857			1343 bp distal
Rr575858	regulatory region 575858			within coordinates
Rr575859	regulatory region 575859			79 bp proximal
Tssr28972	transcription start site region 28972			within coordinates
Tssr28973	transcription start site region 28973			27 bp upstream
Tssr28974	transcription start site region 28974			748 bp upstream