rs46747173 SNP Detail

Summary

• ID
  rs46747173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134165925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT GCAGATGGTT GTGAGCCACC
  R
  TGTGGTTGCT GGGAATTGAA CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147530350	ENSMUSSNP1182678	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321347839	CHEV_4_133994529	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46747173					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134165925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15040	CpG island 15040	1444 bp distal
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	1611 bp distal
Rr601676	regulatory region 601676	579 bp proximal