rs46746605 SNP Detail

Summary

• ID
  rs46746605
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGGCTC TAGATAACTA
  AGCAAGCATG ACTTTATTAT ACTTAATAGG TAGCTGTAGC TAACAGGTGC ATTCTCTAAC
  TTCATTATTG AAAAATTTAT GACACCAGAT GACCTCCTAG ACACTGAAGG TGACAATACT
  GAGGCCATTT AAACCTGGAA AAGGATGATT TTCTGAAACC TCTCTTGGTT TAATTTATTT
  M
  TGCATAAATG TAGCAACGAG AAAATGCACT GAGATCCCTT GGAAAGGCCA CCACGTCCTA
  CACATGTACA GGGTTGTTAG AGAAACCTCA AAGGCTCCTT TAAATCTTGT AGGATAAATC
  AACATATGTG AAATTTACAA AATAGTCCTA TAAAATATGA CCAAAAAATA TGACATGGCA
  AAAAAACTGC ATAGATCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079218	ENSMUSSNP884279	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320429689	CHEV_2_101481205	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46746605					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471393 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	901 bp distal
Tssr25364	transcription start site region 25364	925 bp upstream
Tssr25365	transcription start site region 25365	812 bp upstream
Tssr25366	transcription start site region 25366	219 bp downstream
Tssr25367	transcription start site region 25367	515 bp downstream