rs46744531 SNP Detail

Summary

• ID
  rs46744531
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAAAT TTTGCTTTGT
  GTAAGCTAAT GTTTAACTTT AATAATCTTT TCATTAGTCC TAAAGACTGT GCTAATTATT
  CAAAGTAGTG CTTCATCTTT TGTGTGTATT GTTTTCCCAG AGCTGGTGAG CAGCTGCATC
  GGGGCTATTA GATAATGCCT GTCTATATTG TGAGAGGTTA AACGTTCTAG AAACCAGCTT
  S
  CAGCCTCCTC GTGTCTTGGC TTGGACTCTT CAAAGAGACT GAAAAAAAAT ATTCTACAAC
  CCCTGCCTTG CTTTGCAGAA GCCATGTAGG ACTCCCAGGA GCCTAACCAA TGCAATGCTG
  CCATGCAGCC GGGGAAGGGG GACGTAGGAG ACATTTGAAG CACTCTGAGT CACTCGATAG
  CCTAGCTTCA TGGCTTCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60398360	NES15902911	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs46744531					SNP	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398360	NES15902911	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332979 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1533 bp upstream
Rr575940	regulatory region 575940	1566 bp distal
Rr575941	regulatory region 575941	1647 bp distal
Rr575942	regulatory region 575942	1049 bp distal
Rr575943	regulatory region 575943	within coordinates