rs46743024 SNP Detail

Summary

• ID
  rs46743024
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79960994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTCTGAG CAGCTGTTCG AGTTGTCAAA ACATATTGAT
  AAGGATACTA TTACCTAGGT GTTCATCTTT GCTCAGAAGG TCACAATTTT ACCTCTACTG
  W
  ATCCTCATTT ATTATCTTAG ACACCTTCAC TTAGTAAACT TCTATATAAT TTTTCTTAAT
  GGATAATGAG CAAACCACCT GAATTCTGCT AAGATGGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146789767	ENSMUSSNP7223011	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320362032	CHEV_2_79970807	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46743024					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79960994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	1402 bp distal
Gm13674	predicted gene 13674	1280 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	1221 bp distal
Rr560062	regulatory region 560062	702 bp distal
Tssr24917	transcription start site region 24917	1654 bp upstream
Tssr24918	transcription start site region 24918	1627 bp upstream
Tssr24919	transcription start site region 24919	1512 bp upstream
Tssr24920	transcription start site region 24920	1477 bp upstream
Tssr24921	transcription start site region 24921	1458 bp upstream
Tssr24922	transcription start site region 24922	1407 bp upstream
Tssr24923	transcription start site region 24923	1372 bp upstream
Tssr24924	transcription start site region 24924	1346 bp upstream
Tssr24925	transcription start site region 24925	1101 bp upstream