rs46742392 SNP Detail

Summary

• ID
  rs46742392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60090120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG GGTTCCCAGT CTACTCACTA
  R
  TGGGCCCTGA TCCTTCGCCT ATGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132249127	ENSMUSSNP3762774	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46742392					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60090120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2979	CpG island 2979	529 bp proximal
Mir6921	microRNA 6921	1244 bp downstream
Rai1	retinoic acid induced 1	97 bp downstream
Rr448349	regulatory region 448349	767 bp distal
Rr448350	regulatory region 448350	529 bp proximal
Rr448351	regulatory region 448351	766 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1	mRNA-UTR
Tssr108277	transcription start site region 108277	125 bp downstream