rs46740751 SNP Detail

Summary

• ID
  rs46740751
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG AAGAGCACCA CATGTTAGCT
  S
  AGGCAGGTCT GGCGATAAAC CCAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147152829	ENSMUSSNP853283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320445339	CHEV_2_104525846	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46740751					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	208 bp distal
Rr562107	regulatory region 562107	82 bp distal
Rr562108	regulatory region 562108	1144 bp proximal
Rr562109	regulatory region 562109	1656 bp proximal
Tcp11l1	t-complex 11 like 1	Intron