rs46740686 SNP Detail

Summary

• ID
  rs46740686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150062542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACCTTGG GGGCTGAGAC
  GCTGGTACAG AACTGTGGAG GGCAGGGAGC TGGGGGAGAA GAGAGCAGAA GGCAGATAAA
  TGGGCCTGTT TTCTCCAGTT CAGCTCGCAG TCTCATGACC TGTGCAGCCT GTGACCCCTG
  GGGACAGCAG CCCTCCCCTG GACAGTCATT CCCAGAGCAG GCAGGGGCTG ACCAGTACTG
  Y
  TCTCCTTTCC CCACCCACGA CTCATTCCCT GGAATGTTGC CAGGTGATTT TTCTAGTAGT
  GAGCGGAGGC CTGCAGGGGT GCCAGCTGTC TAAGATGAAA ACGCAGCTGC GGATCTGCTG
  CAGAGCTGCT CTGAGGGGCT CGCACACTCC GCGGGAGACA AAATCCAAAA AAGGTTCCTG
  GAAATTAAGC TCTAAGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148044529	ENSMUSSNP3063885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46740686					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150062542 () rs orientation: forward

Symbol	Name	Function Class
H6pd	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	1390 bp downstream
Rr398875	regulatory region 398875	1922 bp upstream
Rr605129	regulatory region 605129	within coordinates
Rr605130	regulatory region 605130	816 bp proximal
Rr605131	regulatory region 605131	1588 bp proximal
Tssr44702	transcription start site region 44702	1587 bp upstream
Tssr44703	transcription start site region 44703	1311 bp upstream