rs46740227 SNP Detail

Summary

• ID
  rs46740227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152054843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCAGTGT TTAAGAGGGC
  TTACCAAGGT CCTGAATTAA ATTTCTAGCT CAAGTAGGTA GCTTGAACAC CTTTATCTGG
  TTTCCATGGA CACAAGCAAA CACACATACA CATAAAATAA TACAAATAAA GCACCCGTAG
  GGCACATGAA TTTTGTGCAG TGTGGTGTCT GTATGTGTAA TGAGAACTCA TATTTAAGAG
  R
  CAGTGCATTT GTGTTACTTC AGAGAGTAGG TAGGTCAGTA ACCTGTTGAA GGCAAGGCTC
  TCCTAATAAG AGGAGTGGCC CATAGGGCTG TAGCGATGTG GGAGAGCACT TAGTATGCAC
  AAGGCCCCGA CTCTGCTCCC CAGAACTACG GGGTGGGAAC CGAATGCAAC ATGTTTTCTA
  AAACTCTACA GTTGAGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136102635	ENSMUSSNP1531214	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321028725	CHEV_3_152012170	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46740227					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152054843 () rs orientation: forward

Symbol	Name	Function Class
Rr587535	regulatory region 587535	1545 bp distal
Rr587536	regulatory region 587536	1402 bp proximal
Tssr32407	transcription start site region 32407	632 bp downstream
Tssr32408	transcription start site region 32408	798 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron