rs46738198 SNP Detail

Summary

• ID
  rs46738198
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG TGATGTCCCC TGAGGATGCC
  A
  GGTCACCCGG ACACACTGTA AATAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548176	CHEV_2_147004518	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46738198					SNP	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147881246	ENSMUSSNP1017185	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12376	CpG island 12376			283 bp distal
Cpgi12377	CpG island 12377			within coordinates
Nkx2-2	NK2 homeobox 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr406682	regulatory region 406682			1508 bp proximal
Rr566759	regulatory region 566759			within coordinates
Rr566760	regulatory region 566760			887 bp distal
Rr566761	regulatory region 566761			493 bp distal
Rr566762	regulatory region 566762			174 bp proximal
Rr566763	regulatory region 566763			1911 bp proximal