rs46734099 SNP Detail

Summary

• ID
  rs46734099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133452384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATAATT AAGAATTAAA
  ATCCTTTTAT CTTGTATATA TTCATATATG TGTGTGTTGT ATACACACAC ACACACATTT
  GCATGTCCAA TTTTGTAAAC ATTAAAAGCC ACCTTCTTTC TTAAATTAGA TTAAAATAGG
  ACACTGATTC ACAATCCTCT TTTCAAATTA AGAGGAAACA AATGGAGGCA GAATCATTTA
  R
  CATCAACCTG AATCACTTGT GCTATTTTAA AGTTGTCTGT ATGGAGTTTC ACACCAAATA
  AGCAGGAAAA CTTAGCTGCT ATTTACCACT TACACCGGAG AAGATAGAGG ATTACAGAGG
  ATGCTTTGTA ATTTAAAAGA GAAATTAGCT AGAGCTTGAC ATGAAGAGAG TGCAATGCTT
  ATAATCCCAG CTCTCAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084149	NES16592643	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46734099					SNP	G	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084149	NES16592643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133452384 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	within coordinates
Rr585594	regulatory region 585594	1881 bp proximal