rs46733489 SNP Detail

Summary

• ID
  rs46733489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116123928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTTCTT CCCGTCTGTC
  AGCACTTCAG CCAGAGCTCC CATCTCGGCT TGGCATGCCT TGAACCGGCC AGATGTCTTC
  CCTGACAGCA GAGTCTCTGG TGCATTCCCT TCAGAGCCCT GAGGACCAGC AGAGGCTCTT
  CCTCCACGGG CCTCCGTCCT CCCAACTCCC CTTTGTTTCT TTCATCCCTC AGCCTCAAAG
  R
  AACCCACTAC CTTCTCCATC GCCCTCTGCA TCCTTCGTTG CTGTCTTTCT TCTTAGTCTC
  ACTGTAGCAA ACTCCCTGTA CTAAATTTCC TCTGAATGCC TAACATCAAG AACTCTGATG
  ACAGATGCTG TTGGAGACGT GTGGAAAGTG GAACTTTTAT TCAATGTAGG TGGGGTGCAA
  GCTAGTACAG CCATTGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437505	NES15945737	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46733489					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437505	NES15945737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116123928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			within coordinates
Rr397962	regulatory region 397962			1707 bp upstream
Rr583694	regulatory region 583694			393 bp distal
Rr583695	regulatory region 583695			1592 bp proximal
Rr583696	regulatory region 583696			1718 bp proximal
Rr583697	regulatory region 583697			1944 bp proximal