rs46729447 SNP Detail

Summary

• ID
  rs46729447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110174647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTGGAG AGTTGGTGGG
  GCTTGAAGAA GGGGACAGAG GGTTGAGAAA AGCCACCAAG TGTCTGTCTT AGGGGCTGCG
  TGTATGTGCA TACAGGATGA GGGGTGAGGT TAGAAAGCAT GCTGTGAGGT AGAGAGCGCT
  TGTGAAATTC TGATGAGAGG TACAAATGAT GCATCAGACG TGTTGTAACT CGAGATTGGC
  Y
  TGACGTGAAT TATTAGCTCA CAGGAGCAAA CTGAAGAGCA GTTTTAGTAG CGTGGTGATT
  GGTGGTCTCA TAAACTGTAG CAGTAGAGAG GTTTTTAAGA ATAAAAACAG CTAAGAATTC
  TACAGAAGTA AGTTTCTCTA ATACAGGGAG TGTGGTGAGT GTGGCCACCC TGCCCAGAAG
  ATCAGAGTTC TTACAAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449569	NES16838447	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46729447					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449569	NES16838447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110174647 () rs orientation: forward

Symbol	Name	Function Class
Rr383904	regulatory region 383904	481 bp upstream
Rr687097	regulatory region 687097	1264 bp distal
Rr687098	regulatory region 687098	within coordinates
Scap	SREBF chaperone	Intron
Tssr87348	transcription start site region 87348	1502 bp downstream
Tssr87349	transcription start site region 87349	1399 bp downstream
Tssr87350	transcription start site region 87350	1375 bp downstream
Tssr87351	transcription start site region 87351	1350 bp downstream
Tssr87352	transcription start site region 87352	1317 bp downstream