rs46725808 SNP Detail

Summary

• ID
  rs46725808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69198290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGAGAG GAGAAGCCGA
  GGTTAGACCG CGGCGAGGGC CTACGGGCAC AGGTTAGCCG CGGCTAAGCC TCCGCACCCA
  GGGCCTCCTC CCTGGTCTGG GGAAGTAAGC TGTGGGAAGT AAAAGGAGGA AAGTGGTTTG
  CAGGGACGGC TGGCTTCAGG TGTCCCAAGG TGAGGCGGGA AGAAGCCAAG GCAAGTCAGG
  R
  AAGTTTGTGA TGGAGACAAA GTTTGGAGGT GCGCAGGAAG TTGCTTGTGC CGCAGGGAGA
  AACCGAGACA GGCGCTTCGA CCTTTGCAGA TGGCCCTGGA AAGACTCAGC CCCATAGCTC
  TCTGCGCGAT CGTGCGCCTG CTGGGTCCTC TCGGCGGATA ATCTGCCCAA GCAGTGTGCA
  GGCCCGGTCG CCCGGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61417122	NES16801211	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	A		G
ss322997870	CHEV_9_69138815	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46725808					SNP	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61417122	NES16801211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69198290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	within coordinates
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	1316 bp distal
Rr682145	regulatory region 682145	within coordinates
Tssr85840	transcription start site region 85840	1159 bp downstream
Tssr85841	transcription start site region 85841	1113 bp downstream
Tssr85842	transcription start site region 85842	1101 bp downstream
Tssr85843	transcription start site region 85843	1071 bp downstream