rs46722382 SNP Detail

Summary

• ID
  rs46722382
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:38919276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACATAC CTCTGATCTC
  AGGACTTGGG AGATAGAGGA AGGTGGATAT CTGTGAGTTG AAGATGAACC TGGTCCACAT
  AGCCAGTTTC AGGCTAGTTT TGGGTCATGC TATGAAACCC TGTATCAAAA ATATGGGAGG
  CAGGGGTGGG GGTGAGGAGA ATTAGAGCAA ACCAGTCCAA ATAATTTCTG GCTGTTTGTG
  W
  TGCTCTTCCT TACTGACCAG CAGAGAAGTT AGTAGCTCAG GTTTGCAACC CAAAAGCAAA
  GGGACAAAGG CCTGTGAGTG ATTCCGTGTC CTAAAGCATT GTGGCAGGAT CTACCCGTCC
  TGCTGAAGAT TCCACTCTTC TGAGCTCTGA TTTCCACTAA GTGCAGGCTG CATCTTGAAG
  AGTGTTTTAA CAGTGCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52233741	NES15205561	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46722382					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52233741	NES15205561	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:38919276 () rs orientation: forward

Symbol	Name	Function Class
Lama4	laminin, alpha 4	Intron
Tssr92972	transcription start site region 92972	330 bp upstream