rs46720811 SNP Detail

Summary

• ID
  rs46720811
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9464584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGGGC GTGTGCACAT
  GTGAAGGTCA GAGGACAACA GTGCTTCCCT CCATCCACCA CGCAAGCCCT GGGCATCAGA
  CTCAGGCCAC CGGGCTCCTT TATCTGACAA TCCATCTCAT GGGCCAGGGA AATGATTTTA
  AATTGAATGT GCCTGTCCAA ATACTTGCAG GAGTAACTTC TATGAAATTT GAAAAAAATA
  K
  ATGGTAATGT TTGTGAAGTT AACTTGTTTG CCTTGAAAGT GCTTCATGTA CAAGTTCCAG
  TGAGACAGTT ATTTAAAATA TTAAAGGAAG AGTAAAATGT CACAGTTTTA TGTAAAAAGT
  AACCAGAAAG CACTGGATGC TGAATCTTTG ATCTGAAAAC TTATATGTAG GTTTATTTAC
  TTCCAAAACA CAAGACTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60369251	NES15871156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46720811					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369251	NES15871156	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9464584 () rs orientation: forward

Symbol	Name	Function Class
Rr374488	regulatory region 374488	within coordinates
Rr573417	regulatory region 573417	987 bp distal
Rr573418	regulatory region 573418	616 bp proximal
Rr573419	regulatory region 573419	827 bp proximal