rs46720040 SNP Detail

Summary

• ID
  rs46720040
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97267934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAGCTC CATTGTTATC
  TTTCTAGTTC TTTATTATTT CCCTTATGTT CTCCACAATG AGGGCCTGTG AGTGTGAACA
  CCCACCCACA CCACAATGGA GCTTTAAATA GCTTCCAATT TCCTGCACAC TATGTCCCCT
  TTGACACAGC TCCTCTATTC AGTCATCTTG GTCTTACTGA AATACATAAG CAGACTTGGT
  T
  AAAAAAAAAA AAGTTTTCTT CTCAGAATGT TTAGCAGTTC CTGGATTCAA TGAACGCAGT
  GTTAAAAGAT ATCGGAACCA CTTGTGCACT GACTCTGCAG AACGGAGGGA AACATTGTCC
  AATTACGGAA AATATCTGCA AATATATTAG CTGTGTTGAA AGGGTTCAGA TCAGACTTGG
  GGCCATGAAT TTTGGATCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss133417085	ENSMUSSNP2714478	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs46720040					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97267934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit326	DNA Segment, Chr 6, Massachusetts Institute of Technology 326			875 bp proximal
Frmd4b	FERM domain containing 4B			Intron
				Noncoding-Transcript-Variant
Rr635133	regulatory region 635133			174 bp proximal