rs46718466 SNP Detail

Summary

• ID
  rs46718466
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTTCCC ATAAATGCCT
  GGCCTGGTGG GCCATGCTGA GGCAGGCATC ATTTTAGCAC CAATAGGCTG GCTCACTTCC
  AGGCTCCCTT TGCTGGCAGA CACATCTTTA CTGTTGGAGG CTGGGTGTGA ATCAGAGGGT
  TGATGAAGCC CTGGGAAGGT TGCATGAGCA CTGGCAGACC CTCAGCCAAC ACAGGAGTGC
  W
  CAGTGAGCCT GACCTCCACG GGCCCTGTGC TGTGTGACGG CAGGTATGAA ACTCTGTTCA
  GTTTCTACCG TATCCTCATC CCTGGGCTCC CTGTCAGGGG CACAGAGGAA GTCTATGTTG
  GTTTCTGTGG GAGTCATGGC TCGCAGCCCA GCATCTTAAT TGTCTTTAGT TTGAAAATAA
  CTGCCTCACT GGACAATGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398365	NES15902906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46718466					SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398365	NES15902906	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332560 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1114 bp upstream
Rr575940	regulatory region 575940	1147 bp distal
Rr575941	regulatory region 575941	1228 bp distal
Rr575942	regulatory region 575942	630 bp distal
Rr575943	regulatory region 575943	within coordinates