rs46714486 SNP Detail

Summary

• ID
  rs46714486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCCCCA GCCACCTTCA
  CTGGCACCCA TAAAGTTGTT AATTGTTTTT CTTTGTTACT GTTGGTCACA AATCAATTCT
  GTGCCTGTTT GATCTCCCAG TAGTTTTCGG CCAGGATTCA GTTACAACTT CCATTCAGCC
  AGGGAATTGC TAGTCAATAA TATGTATAGA GCAGCCTAGC ACGGGTTGGA ATGGGACAGA
  R
  AAACAAGTTC TCATCTTTGG AGCTCATCCT CTCGGACACC TTGCTGTGCA CCCTACCTGC
  CTTGACGGCA TGATGCCAGA GTTGGATGCT TTCCCCATAC AGCAGCAGGA CAGCCCTTCC
  ATAGCTACCA TGTCTTTCTT AGCATTATTG TCAGTGACAC TTCCTAAGAG AAGCCTGGTC
  ATCTTGTCCC CTGTCTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133502628	ENSMUSSNP2188778	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46714486					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429132 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1559 bp distal
Rr636111	regulatory region 636111	1472 bp proximal