rs46712619 SNP Detail

Summary

• ID
  rs46712619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140477082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT GGGGACAATC CTGGCAAGAA
  Y
  GCTACCATTT GAGTTACACT CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147711224	ENSMUSSNP1102050	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46712619					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140477082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15196	CpG island 15196	599 bp proximal
Gm69576	predicted gene, 69576	within coordinates
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr367763	regulatory region 367763	778 bp upstream
Rr603538	regulatory region 603538	1636 bp distal
Rr603539	regulatory region 603539	1857 bp distal
Rr603540	regulatory region 603540	1637 bp distal
Tssr1360	transcription start site region 1360	743 bp downstream
Tssr44277	transcription start site region 44277	775 bp downstream
Tssr44278	transcription start site region 44278	798 bp downstream
Tssr44279	transcription start site region 44279	831 bp downstream