rs46712111 SNP Detail

Summary

• ID
  rs46712111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105804741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CACTATGTCT GTCTACGTGC
  Y
  ACCATGCTTC CTACCATGAT GATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135578419	ENSMUSSNP2375190	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320863588	CHEV_3_105700343	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46712111					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105804741 () rs orientation: forward

Symbol	Name	Function Class
Rr375530	regulatory region 375530	1833 bp downstream
Rr582805	regulatory region 582805	1887 bp distal
Rr582806	regulatory region 582806	1459 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron