rs46709930 SNP Detail

Summary

• ID
  rs46709930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89045629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCTAGTC TAGCTAGCCA GCTTTGCCCC CCAGATCTGC
  TGCCTCTGGC TCCAAGTGCC AGGATTGCAG GTAGCTACCA TATCTGCTCA GCTTTTACAC
  R
  GATTCTGTTC ATCTGAACTC CAGCCCTCAA ACTTGCATGG CAAGGGCTTT ATCCACTGAG
  TCCTCTTCCT AACCCAGTAC TTTATTTTAA AAACAAGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146946519	ENSMUSSNP3513832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321204643	CHEV_4_88773296	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46709930					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89045629 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	1879 bp upstream
Rr595153	regulatory region 595153	569 bp proximal
Rr595154	regulatory region 595154	800 bp proximal
Rr595155	regulatory region 595155	849 bp proximal
Rr595156	regulatory region 595156	1195 bp proximal
Rr595157	regulatory region 595157	1811 bp proximal
Tssr42402	transcription start site region 42402	836 bp upstream
Tssr42403	transcription start site region 42403	825 bp downstream