rs46709840 SNP Detail

Summary

• ID
  rs46709840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51917327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCTGGC CTTGGCACCT
  ACCTGACACT CAAGTCTCCT TTGTAGGGAT ACAGCCCACT ATTAGCAGAG ACCCAACACA
  AGAGGGACAG ATAAGAGGTT GCTAAAAGTC CACACTGTCT GCAGGTGAAT CCTCTCGGAA
  ATAAACGGAA TCATTCTGAG AGAGGCAGAT TATCCACTGA ATTTCACAGA GGAAAACATG
  R
  AGTAAAGTTC TAGGGCTAGA TAACAGGATT CACAGAAACT GCTTTTCCAT GGGTTGTAGG
  ATGAGACTGT CACTCAAATG GTGTTTCTTG TGTCTGGTAT AGTTCTTTGG GTACCAGGGA
  CTCCCTCCCA TTTGGAGAAA GAATCCGTTT AATTAGAAAA GCAAGCTACA GTCTTCTGAA
  GCCTAGCTAA AAAATGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411348	NES15908578	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46709840					SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411348	NES15908578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51917327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13149	CpG island 13149	1928 bp distal
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	338 bp distal
Rr576437	regulatory region 576437	1170 bp proximal
Tssr876	transcription start site region 876	685 bp upstream
Tssr33242	transcription start site region 33242	811 bp upstream
Tssr33243	transcription start site region 33243	749 bp upstream
Tssr33244	transcription start site region 33244	725 bp upstream
Tssr33245	transcription start site region 33245	666 bp upstream