rs46705643 SNP Detail

Summary

• ID
  rs46705643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC AGCCAGGAGG CTCGCAGGTC
  Y
  ACGCCCCTTG GCACCGGAGC CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss52177444	NES15227142	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	C	T	C	T	C
ss146960170	ENSMUSSNP5876203	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs46705643					SNP	T	T	C	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52177444	NES15227142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034418 () rs orientation: forward

Symbol	Name	Function Class
Raet1a	retinoic acid early transcript 1, alpha	90 bp upstream
Raet1e	retinoic acid early transcript 1E	23 bp upstream
Rr384270	regulatory region 384270	814 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	78 bp proximal
Tssr92677	transcription start site region 92677	114 bp downstream
Tssr92678	transcription start site region 92678	38 bp downstream
Tssr92679	transcription start site region 92679	2 bp upstream
Tssr92680	transcription start site region 92680	47 bp upstream