rs46701591 SNP Detail

Summary

• ID
  rs46701591
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCACAC CCTGGCTAGA
  TCTGGGAAGC AAGAGCTGAT TGTGGGGGTG GGAAGGGGGA GTTTCTTTTA CTTTATCCCT
  GTAGGGGGCA CAGTTCTTTT CTTAAAGTGC TGTCTCTAGA CCAAGGCTGC TTTAAATCTT
  CTCACTGATG TGGGTAAAAT GAAACAGAAA TCAGAAAGGC CCAAAATGAC TCACAAGACT
  G
  TCATGGGCTC CTTATAAAAC CCAAGGTCCC TGGGGACTTT CCATAAGCAA GTCAATTGTT
  TAAGGAAAAA GGAAAGGAAG AAAAACAGCA AGAATGACTC TATCAATACC CAAACAGGCC
  TTAGGTAAGA AAAGTTTATA TGGCCCTAGA TGGTATATGG ATATATGTAT ACAAATTAAT
  CATCTACTGA TGATAAATCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136104402	ENSMUSSNP952244	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321029045	CHEV_3_152549949	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46701591					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592622 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	311 bp distal
Rr587620	regulatory region 587620	106 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron