rs46701298 SNP Detail

Summary

• ID
  rs46701298
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72062364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT CTCCCTTCCC CCACCGTGAT
  C
  TCACTCAATC CTTGGGGCCA GTCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322705024	CHEV_8_74133619	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46701298					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72062364 () rs orientation: forward

Symbol	Name	Function Class
Colgalt1	collagen beta(1-O)galactosyltransferase 1	1278 bp upstream
Niban3	niban apoptosis regulator 3	1784 bp downstream
Rr400935	regulatory region 400935	1131 bp upstream
Rr665132	regulatory region 665132	634 bp proximal
Rr665133	regulatory region 665133	788 bp proximal
Rr665134	regulatory region 665134	1248 bp proximal
Tssr77899	transcription start site region 77899	1382 bp upstream
Tssr77900	transcription start site region 77900	1440 bp upstream
Tssr77901	transcription start site region 77901	1483 bp upstream
Tssr77902	transcription start site region 77902	1510 bp upstream
Tssr77903	transcription start site region 77903	1530 bp upstream