rs46699007 SNP Detail

Summary

• ID
  rs46699007
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13841359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTTTCC TTTATAATTG
  AGTACAGTTA CACTTATTTC AGGTCCCCCT CCCCCCAGTT ATTAGATAAA AATGCCAATT
  TTTTTATTTT TTTTGGCTTG CAAGGTGCTC AAAAACTAGT GAAATAATTT TTAATTTAGT
  TCATTAATGC TACAGGAGAA AAAGCCAGAT TTTGCATCTT TCAACAACAG GGGTTTTAAA
  K
  ATATATTTAG TGGATGGACA AGGTTTCATA TTAACAAGAA GTTCTCAAAA AAGTGTATCG
  ATTACTGAAG ATTTGTTCTC ATATTGTAGG GTTACTGATC TCAGCTAATT TCTTTTTTGA
  TTCCTTGTAT CACCAAACAT AGAAAAAAAA TTTTTTTTTG AGTTAAGGTA CAAAGCAAAT
  GCAACAAAGT ACTTTATACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133003925	ENSMUSSNP60567	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46699007					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13841359 () rs orientation: forward

Symbol	Name	Function Class
Gpr85	G protein-coupled receptor 85	1418 bp upstream
Rr626596	regulatory region 626596	998 bp distal
Tssr59848	transcription start site region 59848	1922 bp upstream
Tssr59849	transcription start site region 59849	1850 bp upstream
Tssr59850	transcription start site region 59850	1826 bp upstream
Tssr59851	transcription start site region 59851	1452 bp upstream
Tssr59852	transcription start site region 59852	1419 bp upstream