rs46693267 SNP Detail

Summary

• ID
  rs46693267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5155843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGGAA GAACAAAAAT
  AAGAGAAAAC GTGTTTGGCT CTCTTCTGAA GCATCCTTAT TGTGTTGGCT TAAAGGTAAA
  TGACTGACGT CAGTGATGTG GGGGATGGGA TTGAGTTAAT CTAGTGACTC AAAAGTTGTC
  AGCATTCCTC TACACAAGGT TAATGTGAGA AAAATTAGAA CTACTCCAAC AAATATTATA
  R
  CTCTGCTGTT TATTGTAACT TCATCATCAT AAAAAAAGCC CCGTATCAGT ATTGTCGTCT
  CTAAAGGTCA ACTTTGAAGT CTGTGTGTGT GTATGTGTGT GTGTGTGTGT GTGTGACTGT
  CTATGAACAC TCCACACAGA GCTCATGAGT TTTCATTTAA AACCCAGTAA GTAATAGTAA
  GATGTTTTGA TATACAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60366976	NES15869426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46693267					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366976	NES15869426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5155843 () rs orientation: forward

Symbol	Name	Function Class
Gm17308	predicted gene, 17308	within coordinates
Rr573165	regulatory region 573165	1555 bp distal
Rr573166	regulatory region 573166	831 bp distal
Rr573167	regulatory region 573167	497 bp distal
Rr573168	regulatory region 573168	213 bp distal
Tssr28264	transcription start site region 28264	468 bp downstream