rs46686471 SNP Detail

Summary

• ID
  rs46686471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73071904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCTCCC AGGGTCCTGT
  GGAAATCTAA TGAGCTAATT CCTGGCACAG ATGCCCAACA TCAACAAGAG AACCCACCGA
  AAGAGGTCCC GGTGGCAGTG GTACCCAGGA ACTTAGTCAT TGATGAATCC ATTTGTCTCG
  GGACAAATCC TGTATTCTTG CTGGGGAGAT AAACCAATAG TTGATACTTA CATAATCTAA
  M
  GACCCACATG GCAGCAGACT CCAGGAAGAG AAGCAGGTAC ATTCTGAGTG GCCGCCTAAG
  GAAGGAAGAA AAGGGATGCT CCTCTTTGGA GGGGTAAAAG GCATGTGTGA CTAACTCACC
  ACACGAGTTT CTGGAGCAAG GCATGTCAGA AGGTGGAGAA AGCATTCTAC AAAGAGCAGA
  GTATGCGGGG GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020312	NES16107371	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46686471					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020312	NES16107371	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73071904 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	94 bp upstream
Rr380947	regulatory region 380947	1169 bp upstream
Rr648940	regulatory region 648940	353 bp distal
Rr648941	regulatory region 648941	within coordinates
Rr648942	regulatory region 648942	142 bp proximal
Rr648943	regulatory region 648943	495 bp proximal
Rr648944	regulatory region 648944	1852 bp proximal
Tssr72937	transcription start site region 72937	383 bp downstream