rs46676987 SNP Detail

Summary

• ID
  rs46676987
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GACGGAAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA
  AGGAAGGAAA AGGAGAAAAC ACACTTCCTG GGATGGGATG AGACCAATCT GCAGAGTTCT
  TACTCTGCAA GCATGGGGCC CTGAGGTCAA TCCCCTGGAA CCCAGCTTTA AAAGGGAAAG
  K
  TGATTCAGTG GTTAAGAGCA CTGGCTGCTC TTCCACAGGA CCCAGGTTCA ATTCCCAGCA
  CCCACATAGC TGCTTGCAAT TGCCTGAAAC CCCAGACCCA GGAGATCCGA AGCCTCTTCT
  GATCATTGAG GGCACCAGGC ACACATGTGG TGTGCATACA CACATGCAGG CAAAACACTC
  ACTCACATGC CTATATGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553097	ENSMUSSNP6600049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46676987					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621510 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1195 bp upstream
Rr602181	regulatory region 602181	1050 bp distal
Rr602182	regulatory region 602182	734 bp distal
Rr602183	regulatory region 602183	792 bp proximal
Rr602184	regulatory region 602184	1206 bp proximal
Rr602185	regulatory region 602185	1772 bp proximal
Tssr39650	transcription start site region 39650	981 bp upstream
Tssr39651	transcription start site region 39651	1185 bp upstream
Tssr39652	transcription start site region 39652	1215 bp upstream