rs46676904 SNP Detail

Summary

• ID
  rs46676904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGATCTT GTCTAAAACA
  TAAAAATACA AATCTCTTCT TGAGGGACTT AGATTTATCA AAGCCTGAGC AGTATTTGTT
  CAGGGCTTCT GCACTGTCGG CCCTGAAACA CACGAATGCT CTTGACGGGC ACTCTAGTGC
  AATGAGGTTA GCTTGAGAGA ACTCAATCCA CCTTCCCTCT TTACAGCAAA GCAATGTGGG
  R
  TCTGGAGAAA GTAAGCCACT TCCCATTATG TCATTTATGG ACCAAAGCAG CAAGGTTGTT
  TTTAAAATCA TTTTGTGCCA CTATAGGCAC TCAATCATGT ACCCACACTT GTACTACTGC
  AGGCAATCAT GTACACACAT CTGTGCCACT GCAGGCAATC ATGTACACAC ACCTGTGCCA
  CTGCAGGCAA TCATGTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60887160	NES15965983	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46676904					SNP	A	G	G	G	G	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887160	NES15965983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			900 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr631117	regulatory region 631117			1923 bp distal
Rr631118	regulatory region 631118			1839 bp distal
Rr631119	regulatory region 631119			1521 bp distal
Rr631120	regulatory region 631120			395 bp distal
Rr631121	regulatory region 631121			within coordinates
Rr631122	regulatory region 631122			1180 bp proximal