rs46670580 SNP Detail

Summary

• ID
  rs46670580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCAGTT AGTCAACGTG
  GAAAAACACA GCCCACTCTG GGTGGCACCA TTCCTTGGAA GGGACCCTAA ACTGTACACG
  AGTGAATAAA TAGAACAGAA CATACAGGTA AGCAACTGAG CATGCATGCA ATCATCCTCT
  CTTTGTCCTT GACTGTGGAT GTGATGTGAC CAGCTCCCTC AAGCTCCTGC TGCTACTTCC
  Y
  TGCTAGGATG TATTATAACC TGAAATGTTG AGCTAAAAGA AGCTTTGTTC TGTAAGTTGC
  TTTTTGTCAG GATATTTTAT TACTGAAACA GAAATAAAAC CAAAACACCA TAATGTAACC
  ACATATTTCC CATCATTGCA AATTAGCTAC CTAAACAAAA CTCTCATTAA TAGCCTAGTG
  GGAAAATAAA GTGTCCCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961627	ENSMUSSNP1950128	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46670580					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104534 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
Rr626348	regulatory region 626348	394 bp proximal
Rr626349	regulatory region 626349	1272 bp proximal