rs46665334 SNP Detail

Summary

• ID
  rs46665334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153427907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGATTTC GTTTTATAGT
  TTCTAGTCTG TCATTGAAGT CAGAGCAAGA ATTCAAGGCA GGAACCTGGA GGCAGGAACT
  AAATGGGTCA CTGGGGAATA CTGCTTTCTG GCTTGCTCAT CCATGGCCTG CTTACCCATG
  GTTGCTTTCC TATACCACCT AGGATCATCT GCCCAGAGGT AGCACCATCC ACAACGGGAT
  R
  AGCCCTTCCA CATTAAACAC CAAATGAGAA AACGTCTCAC AGAGTTGCCT AAAGGCCAAT
  CGAATGGAGG CTTTTTCTCA AGGGAGGCTC AAATGGGATA CCCTGGCTTG TGTCAAGTTC
  ACAAAAAACT AATCAGAACA CCCCTTCTAT GAGTATTTCA TACACAGAAA TACAGACAAA
  CACGCACGGA AGACATAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111653	ENSMUSSNP3300364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46665334					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153427907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587738	regulatory region 587738			1960 bp distal
Rr587739	regulatory region 587739			1333 bp proximal
Rr587740	regulatory region 587740			1779 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1635 bp upstream
Tssr36239	transcription start site region 36239			1213 bp upstream