rs46665051 SNP Detail

Summary

• ID
  rs46665051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146557199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCATGTA AGTGCTCAAT TGGTGTTATT CAAGGGGCCA
  GTTTATTCCA GAAACAGTAA CTTTAAGTTG TGAAATTTCA TTTTATTTGG GATACATAAA
  R
  CACCCCACCC TAGTCTTATT TTATAGGTAA CTGCCAATTT TCTTCTAGAT GGAGAGCTAT
  ACAGTTGGTT GTTAACCATT GTGTTCTGGA AACGTACGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136046457	ENSMUSSNP625709	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321011184	CHEV_3_146514408	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46665051					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146557199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	686 bp proximal
Gm65628	predicted gene, 65628	within coordinates
Rr587096	regulatory region 587096	433 bp proximal
Rr587097	regulatory region 587097	934 bp proximal
Rr587098	regulatory region 587098	1212 bp proximal
Tssr32369	transcription start site region 32369	915 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	923 bp upstream