rs46661886 SNP Detail

Summary

• ID
  rs46661886
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19217378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG ACCCAGAACA CTGAATTGGA
  M
  CCAAGGGCTC GCCGTCCACG GAGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134665478	ENSMUSSNP5219450	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320678113	CHEV_3_19063214	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46661886					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19217378 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	mRNA-UTR
Cpgi13000	CpG island 13000	within coordinates
Gm65410	predicted gene, 65410	within coordinates
Rr397613	regulatory region 397613	within coordinates
Rr573944	regulatory region 573944	160 bp distal
Rr573945	regulatory region 573945	362 bp distal
Rr573946	regulatory region 573946	within coordinates
Rr573947	regulatory region 573947	95 bp proximal
Tssr32687	transcription start site region 32687	129 bp upstream