rs46661122 SNP Detail

Summary

• ID
  rs46661122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150020071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCAGAG AAAACAGACT
  TCTTGTCCCA AACGTGACTG TCTAGTCTAA TGTCAGCTTT AAGTTAAGCA TCACTGAGTT
  GGCGTCATGG CGCTTGCTTC CTGGCTTCAA GGCTGTCACA CACATCCCAG AATCTCTGGG
  CACCAGGAGA CAACTGGCCA GTGGCTGCCT CACATGAGGA CCCACGCAAA GTTCTCTTTA
  Y
  GGGAAAACAG GCTGGCCGCT GGCACATTCA GCACCAGGGA AAGCCAGGCT TGGATTTTTT
  TCTCCCAGGA TACAATAGGT TTTGTCTTGA CTCCTACCCC ATGGCTACCC ACTCAGCCTC
  CTCAGTAGAA ACAGTCCAGG ACCCCCAGGC TACTTCACCA AACTTTCTGA ACCTGGCTGG
  CCACAAAGAC ATCAAGGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148043560	ENSMUSSNP3770397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46661122					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150020071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			766 bp upstream
Rr605111	regulatory region 605111			1424 bp distal
Rr605112	regulatory region 605112			1251 bp proximal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant