rs46655370 SNP Detail

Summary

• ID
  rs46655370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT AACAATAATA ATCTTATTAA
  Y
  GATGACAGTA ATAGCAATTA CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147097787	ENSMUSSNP446769	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320433821	CHEV_2_101877309	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46655370					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867497 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	97 bp distal
Rr561617	regulatory region 561617	1785 bp proximal
Rr561618	regulatory region 561618	1897 bp proximal