rs46653852 SNP Detail

Summary

• ID
  rs46653852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34624230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACACTA AAAAGAAGGA
  AATGGAGACT TAGAAGGACC AGGGAGGGAA GGCTGTGAAG GAGAAGATGG TAAAAATAGC
  ATTACTTGGG TTGAAGCTGC TGTCATGAGG CCCAGGCTGT GGACACAGGC TTAAAAAGGC
  AATGATAAAA GAGAAAGTGA AATTGGCAGA CAAGCTTCCA GAAGAACAAA TCGCACAGGA
  R
  AACAAATCGC TGGATTCCTG ACTTCCCGGA ACTCTCCTGA GATGTGAGCT GGGGCGCCTC
  CGAGCCATCT CTGGCTCTCC ACAGTGAGTC CTCTGTTGAA GCTGTCCTTC CAGCCTTAGT
  CTCCAGGGAG CCACAGTGCT GGCACTGTGC ACAATTTAAA GCAGATGTGG GAGAGTCACG
  TGACACCACA GGGTTGTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60385948	NES15887756	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46653852					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60385948	NES15887756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34624230 () rs orientation: forward

Symbol	Name	Function Class
Gm42695	predicted gene 42695	within coordinates
Rr575154	regulatory region 575154	1500 bp distal
Rr575155	regulatory region 575155	within coordinates
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates