rs46652356 SNP Detail

Summary

• ID
  rs46652356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48173909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATATA TACCTGACAG
  AACATTGCCA CTCATGGTTT CAAACATGCT ATAAGTGTAA GAACTCTCTA TGTCTTTCAT
  CACCACCATC ACCACCACCA CCATCATCAT CATCACTTCT CTTACTTTTG CCTTGCTGCT
  GGGCCCTCTT TCTTATTCCT TTTCTTTGCT GCAGACTATT CCACCACAGC ACACCTGAGG
  Y
  TCCCCCATCT TTTGACCCAA CACTTAGCAA TACCCAACTC ATTTCTCGGA AGGGCATGGA
  CTTTCCCCAT CTCCATCTAT TTCTGGGCCC TAGAAGCAAC TGTCCCCTGG GAGACACCTT
  TGTCACTGCC CTGCCCACTC TGCTCCCAAG AGCAGGGAAC AGATAATAAC CTGGGGTCAA
  TCCAGGTCCC AGGGGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62761313	NES17343718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46652356					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62761313	NES17343718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48173909 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	5 bp downstream
Rr528160	regulatory region 528160	119 bp proximal
Rr528161	regulatory region 528161	1701 bp proximal
Tssr145062	transcription start site region 145062	697 bp downstream