rs46647814 SNP Detail

Summary

• ID
  rs46647814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGTTTTT CGAGACAGGG TTCTCTGTTT AGCCCTGGCT
  GACCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT CAGAAGTCCG TCTGCCTCTG
  Y
  CTCCCAAGTG CTGAGATTAC AGGTATGTGC CACCGCTGCC CTGCCAAAAG TCTAGTTTTT
  AAATAGTTTT TCTTGCTCAG AATGTAATGG TTACCCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147789098	ENSMUSSNP173018	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46647814					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1514 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr373996	regulatory region 373996	1246 bp upstream
Rr397362	regulatory region 397362	1827 bp downstream
Rr397363	regulatory region 397363	1162 bp downstream
Rr566426	regulatory region 566426	1928 bp distal
Rr566427	regulatory region 566427	1231 bp distal
Rr566428	regulatory region 566428	1816 bp proximal
Tssr20526	transcription start site region 20526	1930 bp downstream
Tssr20527	transcription start site region 20527	1824 bp downstream
Tssr20528	transcription start site region 20528	1246 bp downstream