rs46647340 SNP Detail

Summary

• ID
  rs46647340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27165181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATTTA TATCATTTGA
  ACATACATAT TTAGAAACAT ACTTTCTTCA ATATGGCAAA ATATTCTCAA ATAAGACATT
  AAATGAGGGG CTTTAAATTA TTTTACTATG TGTGAAGCCT TAAACTCAGA AAAGAGCTTA
  CTGATGTCAC CAAATTTTTC AATGCATAAG CAAATCTTAA GGCAAAAAAA TTTCAACAAA
  M
  TGGAATAATT TTGTGCTGTA TCAGAACATA GGTAAATGTT TGCTGCCATC TTGTGGATAA
  TTATATTATC TGAAATTTTC TGCATTTGTT GCTTATAGTT CAGTTCTAAT ATGATTATTC
  ATCTTATAGC CAATAATTAC ACTTTAAGCA AAACTTTTCA TTAGCTTTGC ATTTCAATGT
  TACAAAGTTA TCCACCTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134702110	ENSMUSSNP4996978	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46647340					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27165181 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Gm25152	predicted gene, 25152	1937 bp downstream
Rr574345	regulatory region 574345	1995 bp distal
Rr574346	regulatory region 574346	within coordinates
Rr574347	regulatory region 574347	40 bp proximal