rs46646159 SNP Detail

Summary

• ID
  rs46646159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56489871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTCACA CTTTAGCAGG
  CAAACAAATC AGAGCATGGA AATTCCGCTT AAACGTAGCT GGTGGTGACC AGGGCACTTT
  ATTATTGAGC AGCTCTCAGA TTCGGTCAGG CCTGCAGATC GTCAACTGGA CTTTCTGATA
  CGTGAATATG GAGGTTAGCT GCACGTGGTG GAAACTCATT TCACTACAAG GCTGTGTGCT
  Y
  TTGCTAGGTC TTTCTACCTA TGCCATATTT ACAAGTAGGC TGCTGAATTT TAGAACAGTA
  GTGGTGTGAT TTCAGAGGTC TCAGTTGCTC TTACTGTCAT AGCCTTATGT AACTGAGATG
  CCCACAAGGA CAAGTCTTGC ACTCAAATGG CTTGGATTTA AAGGAACACA GCCTGCACAC
  TTTATTCATT TTATGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61809888	NES17750303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46646159					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809888	NES17750303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56489871 () rs orientation: forward

Symbol	Name	Function Class
Gm24716	predicted gene, 24716	367 bp downstream
Rr480710	regulatory region 480710	1047 bp distal
Rr480711	regulatory region 480711	469 bp proximal