rs46645985 SNP Detail

Summary

• ID
  rs46645985
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116759845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGGAGT AAGAACAATA
  TTTACAGCTT ATTTCATTTT ACTGCCAAAA GTTAGAGAAT CATAATTTAA TAATAATAAA
  AAAATCAAAC AGCTCTTGCA GTGTTAATGT TTGTTGTTCT TGTCCTTTTA CAGTGAAGTC
  TCTGTGTTGT TGAGTCTTGG TGTCTTAGGG AATTAACATC TTTGCCGTCA TGGACATATA
  K
  AAAAATTATT TCAGTGTAGG AGAGCAGTTA AAAGATTATC TCTGAGTTTT TGTAATTTTA
  ATGCCTTTCA AAAAATGAGA TAACTCTTGA AAGTTCCCTG GGTACGGTGT GTTTTCTTTT
  CCTAGGAAGA AAGAATAGCA GGGGTGGCTT CCTGGGCAAG GCCAGGGCGG AGTAAGCTGG
  CATTTCCCAG GGTGTGCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60435463	NES15933242	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46645985					SNP	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435463	NES15933242	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116759845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52613	predicted gene, 52613			998 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583813	regulatory region 583813			1482 bp distal
Rr583814	regulatory region 583814			73 bp proximal
Rr583815	regulatory region 583815			556 bp proximal
Rr583816	regulatory region 583816			590 bp proximal
Rr583817	regulatory region 583817			1981 bp proximal