rs46639654 SNP Detail

Summary

• ID
  rs46639654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:95900779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCCAGG CAAGCTCATG
  TTACACACTG CATGTCGAAA ATCCTAAGTA TGAACTGAAT GCTCCTCTGT CCCCTCCTGG
  GTCATACCTG TCTTTTCCTG GGTCACACCT GTGAAGACTG GCCATTCTTA GAAGGAAAGT
  CCCAGCCCTG TCAGCACGCC ATTGATCCAC ACACCAATCC AGCTGTTGGT GTGAGCCCCA
  Y
  ACCTCCCAGC ACAGGCAGGT TCCTGGAGGT TATGGACACA GCAGCCTCGG ATCCCATAAC
  ATGTGGGAGA CAGTGAAGCA CTGTGCTGTG ATCCCAACAC CTGGCCTCAC CCAAACTGTG
  CATGCTGGGC ATTTCTGTTC TGCTGTGGCT TTCAACAACT TTGAAAAGCT CAATAAACTC
  CTAATAAGTA AGGAGGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144993694	ENSMUSSNP456006	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46639654					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95900779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32702	predicted gene, 32702			817 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr484141	regulatory region 484141			within coordinates
Rr484142	regulatory region 484142			415 bp proximal
Rr484143	regulatory region 484143			831 bp proximal
Tssr120725	transcription start site region 120725			850 bp upstream
Tssr120726	transcription start site region 120726			1054 bp upstream