rs46637206 SNP Detail

Summary

• ID
  rs46637206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116285788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATGAT CAGAATATTT
  TGTATGAAAA AATTACTTCA ATTGAAAAAA TGAACTGAAA GAAGACAACT CTGTAGGGAC
  TGTGGTGTAG TTCTTCTGCA CTCTTTTTCT TGTTCTTCTT GTTCTCAAAG TCTATCTTAC
  AGCCTAGGTT GGCCTGAAAT GTGCTACATA GACAGAGCTG GCCTCTGACT CTCAAGTGAC
  R
  GGTGGCAGGT AATCACTGCC ATGCCTCATG TGAATTACTT TTATAATCTC AAAGAAAAGG
  CGGCAACCCC ATAAAACTTG AGTCACAATC TTACAAAATT ATATTAGAGA ATACAGTCAT
  TGTGTGTGGT AGCTCCTGCT GCATCTAAGA ACTCCCTGTA GGCTGAGGCC AGAGGATCAC
  AAGTTCTCCT GGTCTACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60437139	NES15943364	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	G	A	G		G
ss320895281	CHEV_3_116195057	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46637206					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437139	NES15943364	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116285788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583727	regulatory region 583727			1012 bp distal
Rr583728	regulatory region 583728			within coordinates
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant