rs46636913 SNP Detail

Summary

• ID
  rs46636913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141294844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTTTTA AATTATTCAT
  AACTATTTGT TTGCCAAACA TGATTATACT TCACATCCTG GTGAAGACTG TTTTAACAAT
  TAACATTTCT GGGTACAGGT GTCAGAGTAA AATAATTTGG GGTTGTAATG ATTTCGTTTT
  AGATCAAATA CCAAATAAAG AAGACTAGTT AGAAATATAC CAAAACTTTG TGTTATTTTT
  W
  AAATCAACAA TAGAACATCA AATAACAGCA TATAACTAGA TGTGCGGGAA GAGATGTTGA
  ATTTAATCTA TTTTTGGTTG TGTTTTTCTT TAACTTATGA AGAAACTGTT ATGTCCTAGA
  AGTGGATGGT GGATGTGATA CATAGGGTAA GAGAGGGACT TTGGGAATCT CTTCTCTCTT
  TAGCTATATG CATGACCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092037	NES16588674	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T		A	T	A		T
ss320993571	CHEV_3_141252047	CHEVERUD	SCREENING_POP	f	SNP					A				T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46636913					SNP	T	A	T	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092037	NES16588674	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141294844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			349 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant