rs46636811 SNP Detail

Summary

• ID
  rs46636811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33028630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGTATA GAAAGACTTG
  ACCCCTCTCC CCCCACCAAA AAAATGTCTA CAAGGTATTT AGGATTCAAA ACTGCTAAAT
  GGGCTTTGTG CTTATTACAT ACATCACCAT CCTCCTGCTT CACTCACCCA GTCCTTAGCA
  AGCCTGTATA GTAAATATTT ATATTATCTC TAATATGTAA GTGAGAAAAA AGTACTGCCA
  R
  ACAAATACCA GGCCCCAGAT GACAGAGTCT CACAGCAGCA AAGCTGTTCC AACTCAACAA
  GTGCAAGTTT CAAGGTCACT ATCAGATATC CCTCTTCAAC ATCGCACTCA ACATCTGATA
  AGACAAGGAA GTGAAAGTAG GCACTGAGGA CCTGGGGCTC TGGGGTCAGG TAACAGGGTA
  ATGCTCCTGC ATACTGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876164	NES15979030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46636811					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876164	NES15979030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33028630 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628160	regulatory region 628160	1687 bp distal
Rr628161	regulatory region 628161	49 bp proximal